Publications

PrePrints
  • Sequential decision making for a class of hidden Markov processes, application to medical treatment optimisation, Alice Cleynen and Benoîte de Saporta, arXiv :2112.09408
  • Medical follow-up optimization: A Monte-Carlo planning strategy, de Saporta et.al. arXiv:2401.03972
  • Unsupervized identification of prognostic copy-number alterations using segmentation and lasso regularization, Cleynen et.al https://doi.org/10.1101/2022.12.14.520497
Published
  • [3] Segmentor3IsBack: an R package for the fast and exact segmentation of Seq-data:  Algorithms for Molecular Biology Cleynen A., Koskas M., Lebarbier E., Rigaill G., Robin S. 2014 http://dx.doi.org/10.1186/1748-7188-9-6 [pdf]
  • [2] Fast estimation of the Integrated Completed Likelihood criterion for change-point detection problems with applications to Next-Generation Sequencing data: Signal Processing,  Cleynen A., Luong T.M., Rigaill G., Nuel G. 2013 http://dx.doi.org/10.1016/j.sigpro.2013.11.029 [pdf]
  • [1] Comparing Segmentation Methods for Genome Annotation Based on RNA-Seq Data: Journal of Agricultural, Biological, and Environmental Statistics, Cleynen, A., Dudoit, S., Robin, S.  2013 http://dx.doi.org/10.1007/s13253-013-0159-5 [pdf]
Thesis
  • My PhD manuscript (in English) can be downloaded here
  • Un résumé de ma thèse (en français) peut être téléchargé ici